HalophFGD

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Basic Information
Locus ID: Sgl47024
Species & Taxonomic ID: Suaeda glauca & 397272
Genome Assembly: GWHEQCX00000000
Description: Ribonuclease H protein
Maps and Mapping Data
Chromosome Start End Strand ID
chrB5 4975569 4976462 - Sgl47024
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.82 34,098.16 Da 60.01 74.55 -0.45
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd06222 RNase_H_like 131 251 4.84091E-24 IPR044730
Pfam PF13456 Reverse transcriptase-like 132 252 3.9E-25 IPR002156
SUPERFAMILY SSF53098 Ribonuclease H-like 128 255 6.7E-10 IPR012337
Gene3D G3DSA:3.30.420.10 - 130 255 2.9E-13 IPR036397
Gene Ontology
Molecular Function:
GO:0003676 (nucleic acid binding) GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_048497848.1 uncharacterized protein LOC125496441 [Beta vulgaris subsp. vulgaris] 0
TrEMBL A0A803LKW3 Reverse transcriptase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Amaranthaceae Suaeda aralocaspica 1 GOSA_00028516
Amaranthaceae Suaeda glauca 12 Sgl10339, Sgl12213, Sgl12320, Sgl15576, Sgl17452, Sgl17603 ...
Sgl31150, Sgl36493, Sgl42248, Sgl47024, Sgl59481, Sgl82781
Arecaceae Phoenix dactylifera 1 gene-LOC103715302
Malvaceae Hibiscus hamabo Siebold & Zucc. 1 nbisL1-mrna-11805
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.