Basic Information
Locus ID:
Sgl46814
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 3311856 | 3315554 | - | Sgl46814 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.26 | 142,409.52 Da | 40.10 | 88.53 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 360 | 625 | 3.95222E-48 | - |
| CDD | cd06222 | RNase_H_like | 1072 | 1194 | 2.33546E-28 | IPR044730 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 879 | 965 | 9.7E-17 | IPR026960 |
| Pfam | PF13456 | Reverse transcriptase-like | 1073 | 1195 | 2.9E-17 | IPR002156 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 363 | 592 | 1.5E-37 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 307 | 586 | 4.0E-19 | IPR043502 |
| SUPERFAMILY | SSF56219 | DNase I-like | 5 | 105 | 2.3E-15 | IPR036691 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1069 | 1196 | 1.52E-13 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 1070 | 1197 | 8.5E-15 | IPR036397 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 2 | 105 | 6.6E-14 | IPR036691 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 344 | 625 | 14.717833 | IPR000477 |
| Coils | Coil | Coil | 193 | 213 | - | - |
| Coils | Coil | Coil | 134 | 154 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24255.4 | - | 0 |
| RefSeq | XP_048497307.1 | uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris] | 0 |
| Q03274 | Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1 | 0 | |
| TrEMBL | A0A2N9EMX2 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8069 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23361 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017683 |
| Amaranthaceae | Suaeda glauca | 26 | Sgl03531, Sgl03532, Sgl06702, Sgl08674, Sgl08675, Sgl10543 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0013210 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G20438, Lb4G25393 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.137 |