Basic Information
Locus ID:
Sgl46768
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 2960120 | 2969749 | + | Sgl46768 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 124,920.07 Da | 44.73 | 77.82 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 464 | 498 | 5.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 503 | 541 | 0.089 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 926 | 960 | 0.0013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 359 | 675 | 9.16E-41 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 843 | 1105 | 7.87E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 838 | 1114 | 8.6E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 523 | 701 | 2.2E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 321 | 522 | 1.8E-26 | IPR015943 |
| SMART | SM00667 | Lish | 4 | 36 | 9.8E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 411 | 451 | 6.5 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 5.6E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 1012 | 1053 | 40.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 833 | 875 | 9.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 501 | 542 | 0.0064 | IPR001680 |
| SMART | SM00320 | WD40_4 | 921 | 960 | 7.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 878 | 918 | 5.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 591 | 631 | 4.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 351 | 390 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 457 | 498 | 2.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 547 | 588 | 41.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 928 | 962 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 464 | 507 | 10.541869 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 928 | 969 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.464534 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.608736 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1119 | 1137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1109 | 1137 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_010687939.1 | topless-related protein 4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LH73 | Topless-related protein 4-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology