Basic Information
Locus ID:
Sgl46733
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 2612451 | 2621507 | - | Sgl46733 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 63,100.29 Da | 25.44 | 101.42 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 440 | 536 | 9.99314E-28 | - |
| CDD | cd00030 | C2 | 264 | 366 | 1.60858E-25 | - |
| Pfam | PF00168 | C2 domain | 262 | 366 | 3.7E-21 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 248 | 1.0E-16 | IPR039010 |
| Pfam | PF00168 | C2 domain | 438 | 539 | 3.1E-24 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 435 | 556 | 1.99E-32 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 257 | 370 | 9.25E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 254 | 390 | 2.8E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 427 | 556 | 1.9E-34 | IPR035892 |
| SMART | SM00239 | C2_3c | 263 | 363 | 3.0E-21 | IPR000008 |
| SMART | SM00239 | C2_3c | 439 | 537 | 4.2E-24 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 243 | 364 | 19.625496 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 419 | 538 | 20.981922 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 28.73649 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 481 | 494 | 8.0E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 455 | 467 | 8.0E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 503 | 511 | 8.0E-7 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_010687878.1 | synaptotagmin-5 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QXK9 | Synaptotagmin-5-like OS=Spinacia oleracea OX=3562 GN=SOVF_135070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology