Basic Information
Locus ID:
Sgl46440
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 496775 | 498733 | - | Sgl46440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.16 | 70,751.49 Da | 38.50 | 106.44 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 456 | 515 | 7.7E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 67 | 2.8E-8 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 265 | 324 | 2.4E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 528 | 587 | 3.5E-9 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 74 | 398 | 1.41E-65 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 301 | 619 | 9.18E-54 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 338 | 622 | 1.5E-85 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 230 | 331 | 2.5E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 138 | 1.5E-24 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 139 | 229 | 2.7E-26 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 478 | 502 | 3.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 574 | 597 | 75.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 335 | 359 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 142 | 166 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 190 | 214 | 37.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 287 | 310 | 44.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 117 | 136 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 550 | 573 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 263 | 285 | 120.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 456 | 478 | 7.1113 | IPR001611 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75820.1 | Leucine-rich receptor-like protein kinase family protein. Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain. | 0 |
| RefSeq | XP_048493662.1 | receptor protein kinase CLAVATA1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SYQ8 | Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana OX=3702 GN=CLV1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0J8B4U2 | LRRNT_2 domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_014570 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_22125, gene_22126 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011420 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41641, Sgl46440 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000011472 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0003080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30049220 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G21477 |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq01G0192, Ceq01G0193, Ceq01G0196, Ceq03G0864 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl01G0214, Cgl01G0215, Cgl03G0944 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1770, evm.TU.LG14.985 |