Basic Information
Locus ID:
Sgl46369
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Metacaspase-1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA5 | 60188316 | 60191086 | + | Sgl46369 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 58,099.81 Da | 42.40 | 85.32 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 5 | 44 | 1.7E-7 | IPR001810 |
| Pfam | PF07734 | F-box associated | 207 | 312 | 2.1E-4 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 83 | 1.2E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 57 | 8.8E-6 | - |
| Gene3D | G3DSA:3.40.50.12660 | - | 397 | 494 | 2.6E-15 | - |
| SMART | SM00256 | fbox_2 | 9 | 49 | 7.7E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 107 | 331 | 1.8E-25 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 3 | 48 | 10.000863 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_010692006.2 | metacaspase-1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P5X4B7 | F-box protein CPR30-like OS=Durio zibethinus OX=66656 GN=LOC111280263 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 3 | Sgl46363, Sgl46369, Sgl51076 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5AG0024080 |