Basic Information
Locus ID:
Sgl45950
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA5 | 57244480 | 57252338 | + | Sgl45950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 68,158.44 Da | 41.99 | 71.99 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 339 | 618 | 2.62701E-59 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 336 | 367 | 1.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 374 | 409 | 6.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 500 | 533 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 583 | 617 | 9.6E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 18 | 37 | 9.7E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 415 | 453 | 0.004 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 330 | 617 | 1.1E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 464 | 618 | 1.7E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 291 | 463 | 8.2E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 495 | 533 | 4.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 370 | 409 | 5.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 456 | 492 | 440.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 579 | 618 | 1.6E-5 | IPR001680 |
| SMART | SM00667 | Lish | 9 | 41 | 2.5E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 537 | 576 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 328 | 367 | 6.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 413 | 453 | 5.3E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 377 | 418 | 14.117617 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 335 | 370 | 9.203785 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 377 | 409 | 11.65559 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 420 | 455 | 9.493783 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 335 | 376 | 11.811761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 420 | 462 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 586 | 618 | 13.211037 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 9 | 41 | 9.794151 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 586 | 618 | 14.384962 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 166 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.1 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_019106660.1 | transcriptional corepressor LEUNIG isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RWK8 | LisH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_026770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology