Basic Information
Locus ID:
Sgl45800
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA5 | 56162516 | 56164961 | - | Sgl45800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 19,050.64 Da | 40.16 | 79.09 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 7 | 165 | 1.00895E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 8 | 43 | 0.0092 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 92 | 128 | 1.2E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 51 | 86 | 0.001 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 164 | 2.5E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 5 | 164 | 2.88E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 166 | 1.5E-48 | IPR015943 |
| SMART | SM00320 | WD40_4 | 47 | 86 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 169 | 2.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 128 | 1.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 0.0027 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 54 | 95 | 10.284687 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 53 | 10.107432 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 164 | 9.639578 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 96 | 130 | 12.314676 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 96 | 137 | 15.654854 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 54 | 95 | 14.017362 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 31 | 45 | 2.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 73 | 87 | 2.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 115 | 129 | 2.5E-6 | IPR020472 |
| Coils | Coil | Coil | 165 | 165 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_019102736.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 isoform X6 [Beta vulgaris subsp. vulgaris] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9ANM3 | Microtubule-severing ATPase (Fragment) OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology