Basic Information
Locus ID:
Sgl45799
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA5 | 56149326 | 56161650 | - | Sgl45799 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 100,358.83 Da | 47.55 | 83.33 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13925 | con80 domain of Katanin | 740 | 897 | 1.3E-49 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 313 | 351 | 1.8E-5 | IPR001680 |
| Pfam | PF12896 | Anaphase-promoting complex, cyclosome, subunit 4 | 30 | 91 | 5.1E-11 | IPR024790 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 305 | 429 | 4.27E-20 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 286 | 444 | 3.1E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 354 | 392 | 2.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 312 | 351 | 5.6E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 319 | 360 | 14.518635 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 319 | 354 | 11.471045 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 338 | 352 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 576 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 487 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 620 | 662 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 620 | 641 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 513 | 590 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_021860218.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X4 [Spinacia oleracea] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QAM5 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Spinacia oleracea OX=3562 GN=SOVF_206220 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology