Basic Information
Locus ID:
Sgl45753
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Heterogeneous nuclear ribonucleoprotein U-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA5 | 55866702 | 55874167 | - | Sgl45753 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 49,750.52 Da | 37.65 | 79.28 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12884 | SPRY_hnRNP | 37 | 223 | 2.28443E-61 | IPR035778 |
| Pfam | PF13671 | AAA domain | 260 | 405 | 1.6E-18 | - |
| Pfam | PF00622 | SPRY domain | 114 | 186 | 4.6E-7 | IPR003877 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 30 | 185 | 7.68E-20 | IPR013320 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 259 | 412 | 3.42E-10 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 255 | 438 | 9.6E-18 | IPR027417 |
| Gene3D | G3DSA:2.60.120.920 | - | 33 | 247 | 4.3E-39 | IPR043136 |
| SMART | SM00449 | SPRY_3 | 80 | 230 | 7.9E-4 | IPR003877 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_010686284.2 | heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8VDM6 | Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Mus musculus OX=10090 GN=Hnrnpul1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9E6C8 | SPRY domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg24852 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_249 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017867 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_8g181590, BVRB_8g181600 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg47951 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg22174 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023929 |
| Amaranthaceae | Suaeda glauca | 10 | Sgl32450, Sgl36373, Sgl37723, Sgl45740, Sgl45747, Sgl45749 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000034949, gene:ENSEOMG00000047444 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7AG0015530, CQ.Regalona.r1.8AG0003980 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30092670, pistato.v30092680 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G007830 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717305 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.278.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G24179 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1472 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1635 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g00420 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0059s00030.v1.0, Dusal.1539s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g09260, gene.Thate04g14510, gene.Thate06g10810 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG12.1036, evm.TU.LG12.1037 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2424, BH09.2643, CH09.2865 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0302340, gene-QOZ80_4BG0333290 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0207270.1, HORVU.MOREX.r3.2HG0207310.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_044098, gene-QYE76_046549, gene-QYE76_046550 |
| Poaceae | Oryza coarctata | 2 | Oco08G016300, Oco08G016310 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g54350.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G246400 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0300896, Pt_Chr0301028, Pt_Chr0301029, Pt_Chr0301030 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G005350, Chr26G016380 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G900200, Tel2E01G900300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG074110, gene_TRIDC2BG080770 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G528600.1, TraesCS2B02G559000.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb069260_P001, Zm00001eb081180_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5953 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22046 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1704, evm.TU.LG14.931 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g12660 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23901 |
| Salicaceae | Populus euphratica | 1 | populus_peu10157 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621936 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009424 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16682 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1185 |