Basic Information
Locus ID:
Sgl45661
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA5 | 55222823 | 55227136 | - | Sgl45661 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 85,399.19 Da | 55.41 | 53.82 | -1.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00665 | Integrase core domain | 41 | 142 | 1.4E-12 | IPR001584 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 43 | 214 | 2.02E-44 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 36 | 213 | 5.0E-42 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 39 | 205 | 23.075104 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 510 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 581 | 607 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 607 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 375 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 568 | - | - |
| Coils | Coil | Coil | 333 | 353 | - | - |
| Coils | Coil | Coil | 583 | 603 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11440.1 | 0 | |
| RefSeq | XP_020867873.1 | uncharacterized protein LOC110224828 [Arabidopsis lyrata subsp. lyrata] | 0 |
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A834XHQ8 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Senna tora OX=362788 GN=G2W53_002212 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7937 |
| Amaranthaceae | Suaeda glauca | 21 | Sgl01711, Sgl02695, Sgl06865, Sgl07852, Sgl10642, Sgl12296 ... |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G004270 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G04102, Ftri5G14832 |
| Brassicaceae | Brassica nigra | 6 | BniB02g026020.2N, BniB03g050210.2N, BniB05g050630.2N ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03974 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_013442, gene-QYE76_055164, gene-QYE76_056584 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10413 |
| Zosteraceae | Zostera marina | 1 | Zosma06g16920.v3.1 |