Basic Information
Locus ID:
Sgl45618
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA5 | 54814316 | 54818556 | + | Sgl45618 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 128,780.25 Da | 46.65 | 88.81 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 362 | 629 | 3.20333E-55 | - |
| CDD | cd06222 | RNase_H_like | 968 | 1087 | 3.27017E-28 | IPR044730 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 368 | 628 | 1.0E-42 | IPR000477 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 818 | 902 | 7.2E-13 | IPR026960 |
| Pfam | PF13456 | Reverse transcriptase-like | 968 | 1089 | 2.3E-21 | IPR002156 |
| Pfam | PF14529 | Endonuclease-reverse transcriptase | 55 | 183 | 2.3E-6 | IPR005135 |
| SUPERFAMILY | SSF56219 | DNase I-like | 5 | 184 | 4.58E-24 | IPR036691 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 967 | 1093 | 2.28E-13 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 318 | 595 | 1.08E-14 | IPR043502 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 3 | 185 | 6.8E-22 | IPR036691 |
| Gene3D | G3DSA:3.30.420.10 | - | 965 | 1093 | 6.0E-14 | IPR036397 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 348 | 629 | 16.603741 | IPR000477 |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20520.1 | RNA binding;RNA-directed DNA polymerases. | 0 |
| RefSeq | XP_021857848.1 | uncharacterized protein LOC110797061 [Spinacia oleracea] | 0 |
| P0C2F6 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2N9HK62 | CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40015 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||