Basic Information
Locus ID:
Sgl45593
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA5 | 54567178 | 54584978 | - | Sgl45593 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 199,640.19 Da | 46.24 | 81.85 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1573 | 1703 | 3.9E-13 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1035 | 1080 | 4.0E-7 | IPR001245 |
| Pfam | PF01657 | Salt stress response/antifungal | 158 | 239 | 1.0E-8 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 29 | 127 | 9.4E-18 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 1168 | 1266 | 1.1E-19 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 1296 | 1376 | 3.9E-9 | IPR002902 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1473 | 1556 | 6.4E-14 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 947 | 1026 | 6.3E-12 | IPR001245 |
| Pfam | PF00098 | Zinc knuckle | 595 | 610 | 6.6E-4 | IPR001878 |
| Pfam | PF00098 | Zinc knuckle | 905 | 919 | 0.0016 | IPR001878 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 385 | 523 | 7.2E-25 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1455 | 1736 | 7.44E-57 | IPR011009 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 900 | 925 | 1.31E-5 | IPR036875 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 577 | 616 | 6.11E-6 | IPR036875 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 932 | 1121 | 1.07E-35 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 939 | 1016 | 2.4E-29 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 590 | 634 | 1.2E-5 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1430 | 1545 | 4.2E-39 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1030 | 1138 | 2.4E-16 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 1283 | 1381 | 4.9E-17 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1554 | 1719 | 4.2E-33 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 141 | 243 | 3.6E-18 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 1162 | 1269 | 3.7E-25 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 22 | 130 | 1.8E-22 | IPR038408 |
| SMART | SM00343 | c2hcfinal6 | 595 | 611 | 0.0029 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 904 | 920 | 8.9E-4 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 596 | 610 | 9.48789 | IPR001878 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 1275 | 1381 | 14.986201 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1470 | 1704 | 15.368618 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 24 | 130 | 18.996283 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 941 | 1279 | 9.206194 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 136 | 243 | 16.724205 | IPR002902 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 905 | 920 | 9.998857 | IPR001878 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 1163 | 1269 | 19.919598 | IPR002902 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1476 | 1498 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1743 | 1765 | - | - |
| Coils | Coil | Coil | 737 | 785 | - | - |
| Coils | Coil | Coil | 827 | 847 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 8. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_010665661.1 | cysteine-rich receptor-like protein kinase 25 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| O65468 | Cysteine-rich receptor-like protein kinase 8 OS=Arabidopsis thaliana OX=3702 GN=CRK8 PE=3 SV=2 | 0 | |
| TrEMBL | A0A803MVD4 | Cysteine-rich receptor-like protein kinase 25 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 28 | Sgl00169, Sgl03111, Sgl03123, Sgl05219, Sgl08211, Sgl10299 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120106406 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613087 |