Basic Information
Locus ID:
Sgl45137
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA5 | 49594916 | 49607233 | - | Sgl45137 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 135,892.80 Da | 41.64 | 79.87 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 1070 | 1182 | 2.00576E-32 | - |
| Pfam | PF14392 | Zinc knuckle | 183 | 228 | 2.0E-8 | IPR025836 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1078 | 1180 | 9.8E-16 | IPR000477 |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 38 | 178 | 2.3E-13 | IPR025558 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1027 | 1178 | 7.11E-5 | IPR043502 |
| SUPERFAMILY | SSF56219 | DNase I-like | 572 | 803 | 2.52E-21 | IPR036691 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 572 | 804 | 1.3E-22 | IPR036691 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 214 | 228 | 8.630785 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 326 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 349 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20520.1 | RNA binding;RNA-directed DNA polymerases. | 0 |
| RefSeq | XP_019103727.1 | uncharacterized protein LOC109134439 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | F4NCH8 | Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010071, GOSA_00015070 |
| Amaranthaceae | Suaeda glauca | 45 | Sgl00660, Sgl00734, Sgl02856, Sgl04536, Sgl05678, Sgl09582 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000022031 |