Basic Information
Locus ID:
Sgl44915
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA5 | 46014196 | 46015550 | - | Sgl44915 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 46,468.96 Da | 32.93 | 85.90 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00665 | Integrase core domain | 228 | 325 | 4.1E-9 | IPR001584 |
| Pfam | PF13976 | GAG-pre-integrase domain | 161 | 215 | 1.2E-7 | IPR025724 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 226 | 386 | 3.29E-37 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 223 | 400 | 1.0E-37 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 226 | 392 | 19.288057 | IPR001584 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048498090.1 | uncharacterized protein LOC104892859 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9ZT94 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8J6CU53 | Integrase catalytic domain-containing protein OS=Gossypium anomalum OX=47600 GN=CXB51_023279 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||