halophFGD

Basic Information

Locus ID: Sgl44576

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Description: Retroviral aspartyl protease

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrA5	38116320	38121711	-	Sgl44576

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.76	72,378.24 Da	39.74	64.02	-0.78

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00303	retropepsin_like	554	644	7.55493E-18	-
Pfam	PF03732	Retrotransposon gag protein	242	335	2.4E-13	IPR005162
Pfam	PF08284	Retroviral aspartyl protease	533	647	1.3E-26	-
SUPERFAMILY	SSF50630	Acid proteases	548	646	2.2E-8	IPR021109
Gene3D	G3DSA:2.40.70.10	Acid Proteases	535	647	2.4E-13	IPR021109
ProSitePatterns	PS00141	Eukaryotic and viral aspartyl proteases active site.	564	575	-	IPR001969
MobiDBLite	mobidb-lite	consensus disorder prediction	376	420	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	490	533	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	490	535	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	384	420	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	148	170	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	152	170	-	-
Coils	Coil	Coil	361	381	-	-

Gene Ontology

Biological Process:

GO:0006508 (proteolysis)

Molecular Function:

GO:0004190 (aspartic-type endopeptidase activity)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_021754918.1	uncharacterized protein LOC110720219 [Chenopodium quinoa]	0
TrEMBL	A2I5E5	RNA-directed DNA polymerase OS=Beta vulgaris OX=161934 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Suaeda glauca	144	Sgl00054, Sgl00059, Sgl00122, Sgl00123, Sgl00785, Sgl03218 ... Sgl03679, Sgl03687, Sgl03723, Sgl03991, Sgl03993, Sgl04037, Sgl04361, Sgl04545, Sgl04569, Sgl04770, Sgl04822, Sgl04824, Sgl04939, Sgl05054, Sgl05127, Sgl05190, Sgl05796, Sgl08539, Sgl08580, Sgl08790, Sgl08798, Sgl08830, Sgl09430, Sgl09591, Sgl09616, Sgl09814, Sgl09873, Sgl10006, Sgl10108, Sgl13177, Sgl13755, Sgl14041, Sgl14184, Sgl18330, Sgl18480, Sgl19162, Sgl19200, Sgl19418, Sgl19458, Sgl19545, Sgl20479, Sgl20541, Sgl20748, Sgl21403, Sgl21838, Sgl22031, Sgl25859, Sgl25920, Sgl26130, Sgl26728, Sgl27312, Sgl30940, Sgl31162, Sgl32072, Sgl32092, Sgl32156, Sgl32313, Sgl32394, Sgl32643, Sgl32876, Sgl32884, Sgl36504, Sgl36546, Sgl37358, Sgl37387, Sgl37610, Sgl37693, Sgl37935, Sgl38147, Sgl43535, Sgl44020, Sgl44110, Sgl44120, Sgl44521, Sgl44576, Sgl44829, Sgl45070, Sgl46105, Sgl47766, Sgl48331, Sgl48789, Sgl48877, Sgl49024, Sgl49287, Sgl49294, Sgl49339, Sgl49591, Sgl49839, Sgl50799, Sgl52998, Sgl53097, Sgl53337, Sgl53592, Sgl53793, Sgl53890, Sgl58273, Sgl58399, Sgl58853, Sgl58868, Sgl59058, Sgl59221, Sgl64584, Sgl65072, Sgl65136, Sgl65556, Sgl69033, Sgl69559, Sgl69651, Sgl69879, Sgl71961, Sgl71964, Sgl72009, Sgl72023, Sgl72113, Sgl72177, Sgl72187, Sgl72319, Sgl74411, Sgl75527, Sgl75571, Sgl75720, Sgl75740, Sgl75751, Sgl77963, Sgl78783, Sgl78923, Sgl79041, Sgl79422, Sgl79476, Sgl79562, Sgl79692, Sgl79825, Sgl81252, Sgl81496, Sgl81889, Sgl81952, Sgl82030, Sgl82151