Basic Information
Locus ID:
Sgl43993
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
gag-polypeptide of LTR copia-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA5 | 24125988 | 24130720 | + | Sgl43993 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 101,608.62 Da | 50.31 | 76.30 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13976 | GAG-pre-integrase domain | 477 | 541 | 9.7E-13 | IPR025724 |
| Pfam | PF00665 | Integrase core domain | 556 | 652 | 1.3E-9 | IPR001584 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 75 | 201 | 1.3E-18 | - |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 554 | 711 | 3.79E-37 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 548 | 725 | 8.1E-35 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 552 | 717 | 19.88179 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 821 | 837 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 821 | 916 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 848 | 916 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021857917.1 | uncharacterized protein LOC110797130 [Spinacia oleracea] | 0 |
| Q94HW2 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2U1PV21 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Artemisia annua OX=35608 GN=CTI12_AA109860 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 11 | Sbi_jg22532, Sbi_jg22994, Sbi_jg35991, Sbi_jg47084 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg13583, Seu_jg220, Seu_jg24372 |
| Amaranthaceae | Suaeda glauca | 22 | Sgl20258, Sgl21425, Sgl22765, Sgl23137, Sgl26539, Sgl26751 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000004351, gene:ENSEOMG00000049261 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30096180 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G03871 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g03155.v2.2 |
| Brassicaceae | Brassica nigra | 13 | BniB01g008680.2N, BniB01g011550.2N, BniB01g033040.2N ... |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g08420, gene.Cymno02g12120, gene.Cymno07g04820 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g15590, gene.Thate06g10480 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7277 |
| Plantaginaceae | Plantago ovata | 7 | Pov_00001112, Pov_00012497, Pov_00029344, Pov_00029907 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G00201, Lb1G06209 |
| Poaceae | Echinochloa crus-galli | 3 | CH01.4204, CH02.4285, CH02.754 |
| Poaceae | Lolium multiflorum | 23 | gene-QYE76_000053, gene-QYE76_005675, gene-QYE76_009235 ... |
| Poaceae | Oryza coarctata | 7 | Oco02G011690, Oco02G031780, Oco03G007110, Oco03G009910 ... |
| Poaceae | Sporobolus alterniflorus | 24 | Chr01G024190, Chr01G024200, Chr05G013180, Chr05G013190 ... |
| Poaceae | Zoysia japonica | 7 | nbis-gene-15370, nbis-gene-31910, nbis-gene-43348 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g29300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC114075978 |
| Tamaricaceae | Reaumuria soongarica | 3 | MSTRG.20127_chr11_-, STRG.30077_chr10_+, gene_8045 |