Basic Information
Locus ID:
Sgl42900
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA5 | 10241967 | 10244222 | - | Sgl42900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 42,402.44 Da | 68.67 | 77.21 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 232 | 274 | 6.14032E-24 | - |
| Pfam | PF13639 | Ring finger domain | 232 | 274 | 3.8E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 16 | 50 | 1.7E-12 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 216 | 280 | 2.14E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 195 | 280 | 2.7E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 233 | 273 | 9.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 233 | 274 | 12.474524 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010667286.1 | E3 ubiquitin-protein ligase RZF1 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8DXA5 | RING-type E3 ubiquitin transferase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_007800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology