Basic Information
Locus ID:
Sgl42847
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Acyl-CoA N-acyltransferase with RING FYVE PHD-type zinc finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA5 | 9845487 | 9858391 | + | Sgl42847 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 168,635.34 Da | 48.41 | 80.58 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04301 | NAT_SF | 1010 | 1070 | 0.00174588 | - |
| CDD | cd02413 | 40S_S3_KH | 1271 | 1351 | 7.30414E-51 | - |
| CDD | cd15539 | PHD1_AIRE | 814 | 853 | 1.21967E-16 | - |
| Pfam | PF00628 | PHD-finger | 813 | 855 | 1.6E-8 | IPR019787 |
| Pfam | PF05641 | Agenet domain | 20 | 93 | 3.4E-15 | IPR008395 |
| Pfam | PF07650 | KH domain | 1276 | 1349 | 2.0E-11 | IPR004044 |
| Pfam | PF16135 | Tify domain binding domain | 734 | 785 | 3.2E-14 | IPR032308 |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 1362 | 1444 | 9.4E-24 | IPR001351 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 1349 | 1447 | 1.83E-26 | IPR036419 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 800 | 854 | 1.57E-14 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 981 | 1113 | 7.15E-8 | IPR016181 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 1266 | 1355 | 2.05E-24 | IPR009019 |
| Gene3D | G3DSA:3.40.630.30 | - | 965 | 1099 | 2.0E-5 | - |
| Gene3D | G3DSA:3.30.300.20 | - | 1253 | 1347 | 2.9E-47 | IPR015946 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 855 | 915 | 8.9E-6 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 803 | 854 | 2.3E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.1140.32 | - | 1349 | 1477 | 9.1E-63 | IPR036419 |
| SMART | SM00743 | agenet_At_2 | 15 | 82 | 1.6 | IPR014002 |
| SMART | SM00249 | PHD_3 | 855 | 912 | 1.6 | IPR001965 |
| SMART | SM00743 | agenet_At_2 | 101 | 158 | 4.4E-4 | IPR014002 |
| SMART | SM00249 | PHD_3 | 813 | 854 | 5.6E-11 | IPR001965 |
| SMART | SM00322 | kh_6 | 1298 | 1362 | 0.005 | IPR004087 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 1264 | 1447 | 2.7E-69 | IPR005703 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 1277 | 1348 | 10.804601 | IPR004044 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 811 | 856 | 9.997299 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 952 | 1107 | 11.094632 | IPR000182 |
| ProSitePatterns | PS00548 | Ribosomal protein S3 signature. | 1403 | 1439 | - | IPR018280 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 675 | 695 | - | - |
| Coils | Coil | Coil | 1491 | 1493 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58610.2 | - | 0 |
| RefSeq | XP_010685527.2 | uncharacterized protein LOC104899934 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FJA6 | Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KRG7 | PHD-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology