Basic Information
Locus ID:
Sgl42493
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA5 | 7081613 | 7084936 | + | Sgl42493 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 124,270.87 Da | 44.62 | 86.89 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 948 | 1086 | 1.4813E-63 | - |
| Pfam | PF00665 | Integrase core domain | 254 | 351 | 5.3E-11 | IPR001584 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 622 | 862 | 1.3E-74 | IPR013103 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 249 | 415 | 1.39E-35 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 624 | 1054 | 7.34E-33 | IPR043502 |
| Gene3D | G3DSA:3.30.420.10 | - | 245 | 425 | 1.5E-35 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 241 | 415 | 19.079451 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 558 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_048494802.1 | uncharacterized protein LOC109134389 [Beta vulgaris subsp. vulgaris] | 0 |
| Q94HW2 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2N9FYK2 | Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19971 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10961 |
| Amaranthaceae | Suaeda glauca | 13 | Sgl03301, Sgl07869, Sgl08373, Sgl10700, Sgl16034, Sgl34010 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0008630 |