Basic Information
Locus ID:
Sgl42371
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Contains the following InterPro domains Glycoside hydrolase, family 18, catalytic domain (InterPro IPR001223), Chitinase II (InterPro IPR011583), Glycoside hydrolase, catalytic core (InterPro IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro IPR013781)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA5 | 6062187 | 6063287 | - | Sgl42371 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 39,241.70 Da | 33.41 | 85.68 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 41 | 353 | 2.8E-71 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 255 | 324 | 1.83E-11 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 30 | 356 | 8.29E-62 | IPR017853 |
| Gene3D | G3DSA:3.10.50.10 | - | 254 | 323 | 7.7E-90 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 42 | 354 | 7.7E-90 | - |
| SMART | SM00636 | 2g34 | 27 | 353 | 3.0E-80 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 27 | 366 | 61.982033 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 129 | 137 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_010688359.1 | class V chitinase [Beta vulgaris subsp. vulgaris] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R3W0 | GH18 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_109800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology