HalophFGD

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Basic Information
Locus ID: Sgl42210
Species & Taxonomic ID: Suaeda glauca & 397272
Genome Assembly: GWHEQCX00000000
Description: Pentatricopeptide repeat-containing protein
Maps and Mapping Data
Chromosome Start End Strand ID
chrA5 4897769 4901178 + Sgl42210
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.76 71,931.91 Da 36.84 79.44 -0.28
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF13041 PPR repeat family 431 478 4.1E-13 IPR002885
Pfam PF13041 PPR repeat family 256 305 2.3E-13 IPR002885
Pfam PF13812 Pentatricopeptide repeat domain 141 199 6.2E-15 IPR002885
Pfam PF13812 Pentatricopeptide repeat domain 87 127 0.0055 IPR002885
Pfam PF13041 PPR repeat family 361 409 1.2E-12 IPR002885
Pfam PF01535 PPR repeat 329 359 0.43 IPR002885
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 359 617 3.8E-44 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 77 217 1.2E-29 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 218 358 1.5E-39 IPR011990
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 434 467 8.2E-8 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 226 258 0.0019 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 259 293 1.4E-9 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 329 363 9.0E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 295 327 1.4E-6 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 400 433 2.6E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 364 398 2.5E-6 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 156 187 9.3E-9 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 190 223 1.0E-5 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 432 466 12.375365 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 152 186 12.901507 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 187 221 9.404853 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 257 291 12.561707 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 292 326 10.917512 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 327 361 9.328124 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 223 256 8.988323 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 467 501 9.788499 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 362 396 11.662881 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 397 431 10.939435 IPR002885
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
KEGG Pathway
KO Term:
K17710 (pentatricopeptide repeat domain-containing protein 1)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G21222.1 protein kinase family protein. 0
RefSeq XP_021859745.1 pentatricopeptide repeat-containing protein At5g25630-like [Spinacia oleracea] 0
Swiss-Prot Q8S9D1 Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana OX=3702 GN=ATC401 PE=2 SV=1 0
TrEMBL A0A0K9R737 Pentatricopeptide repeat-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_099250 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg3824, jg7860
Aizoaceae Mesembryanthemum crystallinum 2 gene_10714, gene_8166
Amaranthaceae Atriplex hortensis 2 Ah014544, Ah034904
Amaranthaceae Beta vulgaris 4 BVRB_2g031840, BVRB_8g196490, BVRB_8g196500, BVRB_8g196530
Amaranthaceae Salicornia bigelovii 4 Sbi_jg21000, Sbi_jg22782, Sbi_jg24975, Sbi_jg8835
Amaranthaceae Salicornia europaea 2 Seu_jg16657, Seu_jg19774
Amaranthaceae Suaeda aralocaspica 1 GOSA_00007807
Amaranthaceae Suaeda glauca 5 Sgl42210, Sgl46980, Sgl54062, Sgl62458, Sgl67003
Amaranthaceae Chenopodium album 6 gene:ENSEOMG00000010687, gene:ENSEOMG00000018396 ...
gene:ENSEOMG00000019210, gene:ENSEOMG00000032878, gene:ENSEOMG00000047297, gene:ENSEOMG00000050856
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.2AG0016360, CQ.Regalona.r1.2BG0018130 ...
CQ.Regalona.r1.8AG0020160, CQ.Regalona.r1.8BG0022280
Anacardiaceae Pistacia vera 2 pistato.v30253400, pistato.v30256590
Apiaceae Apium graveolens 2 Ag10G01538, Ag7G00293
Arecaceae Cocos nucifera 1 COCNU_03G012070
Arecaceae Phoenix dactylifera 1 gene-LOC103710907
Asparagaceae Asparagus officinalis 3 AsparagusV1_01.1546.V1.1, AsparagusV1_07.2392.V1.1 ...
AsparagusV1_07.417.V1.1
Asteraceae Flaveria trinervia 1 Ftri3G24253
Brassicaceae Arabidopsis thaliana 2 AT5G21222.1, AT5G25630.2
Brassicaceae Eutrema salsugineum 2 Thhalv10003915m.g.v1.0, Thhalv10012659m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp2g21900.v2.2, Sp6g23340.v2.2
Brassicaceae Brassica nigra 3 BniB02g041700.2N, BniB07g025020.2N, BniB07g039680.2N
Casuarinaceae Casuarina equisetifolia 2 Ceq04G2119, Ceq06G1498
Casuarinaceae Casuarina glauca 3 Cgl04G2313, Cgl04G2324, Cgl06G1553
Cymodoceaceae Cymodocea nodosa 3 gene.Cymno02g12490, gene.Cymno02g13330, gene.Cymno12g02340
Hydrocharitaceae Thalassia testudinum 1 gene.Thate09g15860
Nitrariaceae Nitraria sibirica 2 evm.TU.LG07.1088, evm.TU.LG07.775
Plantaginaceae Plantago ovata 1 Pov_00003850
Plumbaginaceae Limonium bicolor 2 Lb7G34995, Lb7G35002
Poaceae Echinochloa crus-galli 3 AH06.2290, BH07.3959, CH06.2313
Poaceae Eleusine coracana subsp. coracana 2 gene-QOZ80_6AG0521710, gene-QOZ80_6BG0474830
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.3HG0248630.1
Poaceae Lolium multiflorum 2 gene-QYE76_051474, gene-QYE76_051482
Poaceae Oryza coarctata 2 Oco01G005680, Oco02G005770
Poaceae Paspalum vaginatum 1 gene-BS78_10G191200
Poaceae Puccinellia tenuiflora 2 Pt_Chr0204886, Pt_Chr0205057
Poaceae Sporobolus alterniflorus 3 Chr07G014820, Chr21G007420, Chr31G007880
Poaceae Thinopyrum elongatum 1 Tel3E01G276300
Poaceae Triticum dicoccoides 2 gene_TRIDC3AG020600, gene_TRIDC3BG030970
Poaceae Triticum aestivum 3 TraesCS3A02G153300.1, TraesCS3B02G179900.1 ...
TraesCS3D02G160600.2
Poaceae Zea mays 1 Zm00001eb315460_P002
Poaceae Zoysia macrostachya 1 Zma_g29714
Portulacaceae Portulaca oleracea 4 evm.TU.LG02.2875, evm.TU.LG05.2345, evm.TU.LG07.1110 ...
evm.TU.LG23.1077
Posidoniaceae Posidonia oceanica 2 gene.Posoc08g13310, gene.Posoc09g07670
Rhizophoraceae Bruguiera sexangula 3 evm.TU.60417.2, evm.TU.60418.2 ...
evm.TU.Scaffold_4_RagTag.1207
Rhizophoraceae Carallia pectinifolia 1 nbisL1-mrna-25631
Rhizophoraceae Ceriops tagal 1 nbisL1-mrna-14993
Rhizophoraceae Ceriops zippeliana 1 nbisL1-mrna-4712
Rhizophoraceae Kandelia candel 1 evm.TU.utg000008l.1113
Rhizophoraceae Kandelia obovata 1 Maker00001456
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-14184, nbisL1-mrna-9731
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-21067, nbisL1-mrna-996
Salicaceae Populus euphratica 4 populus_peu04868, populus_peu12782, populus_peu21928 ...
populus_peu38110
Solanaceae Lycium barbarum 2 gene-LOC132603462, gene-LOC132635663
Solanaceae Solanum chilense 2 SOLCI000411300, SOLCI005497300
Solanaceae Solanum pennellii 2 gene-LOC107026118, gene-LOC107028521
Tamaricaceae Reaumuria soongarica 2 STRG.32841_chr09_-, STRG.3917_chr02_+
Tamaricaceae Tamarix chinensis 2 TC02G0334, TC12G1292
Zosteraceae Zostera marina 1 Zosma05g13580.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.