Basic Information
Locus ID:
Sgl42108
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA5 | 4020316 | 4028491 | - | Sgl42108 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 37,428.38 Da | 42.31 | 84.53 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 76 | 127 | 2.75834E-21 | - |
| Pfam | PF12906 | RING-variant domain | 76 | 126 | 2.1E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 73 | 131 | 4.77E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 60 | 139 | 2.9E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 75 | 127 | 1.4E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 68 | 133 | 21.646908 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_010688092.1 | uncharacterized protein LOC104902110 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A803MQ91 | RING-CH-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology