Basic Information
Locus ID:
Sgl41993
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA5 | 3177258 | 3185353 | + | Sgl41993 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.95 | 120,441.04 Da | 43.29 | 77.43 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 466 | 504 | 0.086 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 427 | 461 | 5.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 889 | 923 | 0.0013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 807 | 1068 | 8.97E-35 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 322 | 638 | 8.97E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 486 | 664 | 2.1E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 284 | 485 | 1.7E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 808 | 1077 | 1.0E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 420 | 461 | 2.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 796 | 838 | 9.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 884 | 923 | 7.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 510 | 551 | 41.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 464 | 505 | 0.0064 | IPR001680 |
| SMART | SM00320 | WD40_4 | 841 | 881 | 5.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 975 | 1016 | 40.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 374 | 414 | 6.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 554 | 594 | 4.6 | IPR001680 |
| SMART | SM00668 | ctlh | 1 | 55 | 9.4E-10 | IPR006595 |
| SMART | SM00320 | WD40_4 | 314 | 353 | 1.1 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 891 | 925 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 427 | 470 | 10.541869 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 891 | 932 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 1 | 55 | 12.567251 | IPR006595 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1072 | 1100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1082 | 1100 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_010687939.1 | topless-related protein 4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LH73 | Topless-related protein 4-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology