Basic Information
Locus ID:
Sgl41983
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA5 | 3067682 | 3073349 | - | Sgl41983 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 138,066.31 Da | 50.86 | 73.86 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 1046 | 1168 | 3.5101E-29 | IPR044730 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 853 | 939 | 9.5E-17 | IPR026960 |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 3 | 71 | 4.6E-11 | IPR025558 |
| Pfam | PF13456 | Reverse transcriptase-like | 1047 | 1169 | 2.8E-17 | IPR002156 |
| SUPERFAMILY | SSF56219 | DNase I-like | 499 | 584 | 6.48E-7 | IPR036691 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1043 | 1171 | 1.39E-13 | IPR012337 |
| SUPERFAMILY | SSF56219 | DNase I-like | 596 | 647 | 1.99E-6 | IPR036691 |
| Gene3D | G3DSA:3.30.420.10 | - | 1044 | 1171 | 8.3E-15 | IPR036397 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 501 | 594 | 1.6E-6 | IPR036691 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 461 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 352 | - | - |
| Coils | Coil | Coil | 676 | 696 | - | - |
| Coils | Coil | Coil | 735 | 755 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01050.1 | zinc ion binding;nucleic acid binding. | 0 |
| RefSeq | XP_048497307.1 | uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A803LKW3 | Reverse transcriptase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23361 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017683 |
| Amaranthaceae | Suaeda glauca | 26 | Sgl03531, Sgl03532, Sgl06702, Sgl08674, Sgl08675, Sgl10543 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0013210 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G20438, Lb4G25393 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.137 |