Basic Information
Locus ID:
Sgl41528
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB4 | 63680528 | 63690679 | + | Sgl41528 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.79 | 39,237.54 Da | 50.59 | 73.29 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 198 | 274 | 1.7163E-15 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 198 | 244 | 1.3E-6 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 28 | 72 | 6.67E-7 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 186 | 283 | 6.02E-14 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 20 | 77 | 2.0E-6 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 180 | 288 | 7.2E-17 | IPR036910 |
| SMART | SM00398 | hmgende2 | 197 | 278 | 5.3E-10 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 1 | 69 | 10.948534 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 198 | 277 | 12.940521 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 204 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021837956.1 | high mobility group B protein 15-like isoform X2 [Spinacia oleracea] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RKE8 | High mobility group B protein 15-like OS=Spinacia oleracea OX=3562 GN=SOVF_061930 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology