Basic Information
Locus ID:
Sgl41405
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Plant transposase (Ptta/En/Spm family)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB4 | 61724681 | 61726531 | + | Sgl41405 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 50,849.75 Da | 52.40 | 62.29 | -1.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 157 | - | - |
| Coils | Coil | Coil | 174 | 194 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048496238.1 | uncharacterized protein LOC125495531 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A175YAW0 | Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_032097 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg61541 |
| Amaranthaceae | Suaeda glauca | 65 | Sgl03681, Sgl04249, Sgl04994, Sgl04995, Sgl08792, Sgl09205 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0009940 |