Basic Information
Locus ID:
Sgl41326
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
gag-polypeptide of LTR copia-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB4 | 60608262 | 60610814 | + | Sgl41326 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 94,834.60 Da | 44.17 | 86.27 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14244 | gag-polypeptide of LTR copia-type | 34 | 79 | 6.5E-13 | IPR029472 |
| Pfam | PF00665 | Integrase core domain | 615 | 714 | 1.8E-12 | IPR001584 |
| Pfam | PF03732 | Retrotransposon gag protein | 98 | 210 | 2.0E-6 | IPR005162 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 611 | 774 | 3.92E-38 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 608 | 792 | 6.6E-39 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 603 | 777 | 18.999216 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 289 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021863062.1 | uncharacterized protein LOC110801962 [Spinacia oleracea] | 0 |
| P04146 | Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3 | 0 | |
| TrEMBL | A0A834W7H2 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Senna tora OX=362788 GN=G2W53_033008 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10961 |
| Amaranthaceae | Suaeda glauca | 13 | Sgl03301, Sgl07869, Sgl08373, Sgl10700, Sgl16034, Sgl34010 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0008630 |