Basic Information
Locus ID:
Sgl40802
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Transducin WD40 repeat-like superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB4 | 55337648 | 55351772 | - | Sgl40802 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 116,233.72 Da | 41.03 | 84.34 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15873 | R-SNARE_STXBP5_6 | 994 | 1034 | 6.30301E-11 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 563 | 799 | 7.32E-12 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 84 | 641 | 1.16E-24 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 49 | 151 | 1.7E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 183 | 484 | 3.1E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 489 | 841 | 1.1E-15 | IPR015943 |
| SMART | SM00320 | WD40_4 | 109 | 147 | 29.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 560 | 595 | 2.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 219 | 260 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 492 | 531 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 399 | 479 | 1.8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 459 | 480 | 8.503359 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 949 | 970 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35560.2 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010683216.1 | uncharacterized protein LOC104897939 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8K400 | Syntaxin-binding protein 5 OS=Mus musculus OX=10090 GN=Stxbp5 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9R4I4 | Lgl_C domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_107770 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17246 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13364 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g154190 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg43163, Sbi_jg45759 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11609 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015121 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35407, Sgl40802 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000000048, gene:ENSEOMG00000002965 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0001520 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30210780, pistato.v30212200 |
| Apiaceae | Apium graveolens | 1 | Ag3G01779 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G014570 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720924, gene-LOC120109958 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.239.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G31009 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G35560.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024291m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g33340.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g087620.2N, BniB05g002860.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0054 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0053 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g07610 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g17320 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10421, nbisL1-mrna-228 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2878 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020335 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G37917, Lb0G37918, Lb5G29408 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1937, BH09.2102, CH09.2247 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0307250, gene-QOZ80_4BG0338280 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0187880.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_045571 |
| Poaceae | Oryza coarctata | 2 | Oco07G013220, Oco08G012790 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g47700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G192200 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0205780, Pt_Chr0301641, Pt_Chr0307375, Pt_Chr0505380 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr23G006440, Chr25G005370, Chr26G013020, Chr26G013030 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G685000 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2BG061360 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G404000.1, TraesCS2B02G421900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb073880_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22555, nbis-gene-5558 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20243 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2477, evm.TU.LG23.697 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g15090 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.2195 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16945 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5964 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11644 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1346 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007952 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15768 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-23693, nbisL1-mrna-23694 |
| Salicaceae | Populus euphratica | 2 | populus_peu14030, populus_peu14031 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621837 |
| Solanaceae | Solanum chilense | 1 | SOLCI004954600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010217 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2322 |