Basic Information
Locus ID:
Sgl40477
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB4 | 52985205 | 52991445 | - | Sgl40477 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 140,497.44 Da | 36.43 | 105.12 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1003 | 1224 | 2.35963E-123 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 690 | 980 | 7.1066E-84 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 387 | 592 | 4.56527E-97 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 75 | 362 | 2.04608E-89 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 1022 | 1171 | 1.7E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 704 | 931 | 3.4E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 414 | 544 | 6.9E-16 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 73 | 341 | 3.4E-20 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 690 | 991 | 1.31E-45 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 998 | 1232 | 1.11E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 67 | 369 | 1.02E-27 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 411 | 605 | 2.28E-48 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 656 | 986 | 2.9E-50 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 51 | 371 | 2.8E-42 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 988 | 1242 | 2.9E-79 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 375 | 640 | 1.1E-66 | IPR027417 |
| SMART | SM00382 | AAA_5 | 418 | 592 | 1.7E-9 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1031 | 1223 | 1.4E-10 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 75 | 354 | 29.819656 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1005 | 1240 | 17.086971 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 692 | 968 | 31.821831 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 387 | 615 | 19.021067 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 517 | 531 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021746601.1 | putative ABC transporter C family member 15 [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M6U6 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology