Basic Information
Locus ID:
Sgl40091
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB4 | 49855932 | 49862133 | - | Sgl40091 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 57,573.06 Da | 59.83 | 61.58 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 138 | 190 | 5.73679E-26 | - |
| Pfam | PF00412 | LIM domain | 138 | 193 | 7.4E-10 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 287 | 502 | 6.4E-108 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 164 | 219 | 6.61E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 130 | 163 | 4.37E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 133 | 197 | 6.6E-15 | - |
| SMART | SM00726 | uim | 45 | 64 | 0.11 | IPR003903 |
| SMART | SM00726 | uim | 86 | 105 | 0.36 | IPR003903 |
| SMART | SM00132 | lim_4 | 137 | 189 | 1.9E-13 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 86 | 105 | 9.2238 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 45 | 64 | 9.993999 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 136 | 196 | 12.1474 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 138 | 172 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 87 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_021758072.1 | protein DA1-related 1-like [Chenopodium quinoa] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9RQ70 | LIM zinc-binding domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_041660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology