Basic Information
Locus ID:
Sgl39802
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB4 | 47679719 | 47690169 | - | Sgl39802 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 49,313.87 Da | 52.27 | 73.45 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.51431E-27 | - |
| Pfam | PF00627 | UBA/TS-N domain | 245 | 282 | 5.4E-10 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 338 | 393 | 1.0E-18 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 74 | 3.9E-17 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 421 | 454 | 4.7E-13 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 401 | 460 | 2.44E-13 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 334 | 400 | 7.59E-18 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 240 | 292 | 4.41E-9 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 82 | 5.99E-21 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 77 | 6.7E-25 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 329 | 394 | 9.1E-22 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 238 | 287 | 1.4E-15 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 411 | 458 | 4.3E-22 | - |
| SMART | SM00165 | uba_6 | 244 | 284 | 0.0013 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.8E-20 | IPR000626 |
| SMART | SM00727 | CBM | 336 | 379 | 1.9E-5 | IPR006636 |
| SMART | SM00165 | uba_6 | 419 | 456 | 7.0E-7 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 180 | 460 | 2.4E-70 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 416 | 457 | 14.016817 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 242 | 285 | 10.643223 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.107122 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 445 | 460 | 3.0E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 364 | 386 | 3.0E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 430 | 444 | 3.0E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 413 | 429 | 3.0E-29 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 162 | - | - |
| Coils | Coil | Coil | 372 | 392 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021754095.1 | ubiquitin receptor RAD23c-like isoform X3 [Chenopodium quinoa] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R6F2 | Ubiquitin receptor RAD23 OS=Spinacia oleracea OX=3562 GN=SOVF_101410 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology