Basic Information
Locus ID:
Sgl39714
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB4 | 46855723 | 46859647 | - | Sgl39714 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.77 | 53,674.09 Da | 40.94 | 80.99 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 409 | 453 | 9.22822E-15 | - |
| Pfam | PF13639 | Ring finger domain | 178 | 222 | 1.8E-11 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 409 | 453 | 2.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 392 | 459 | 6.86E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 178 | 228 | 9.15E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 228 | 1.2E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 391 | 458 | 2.4E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 179 | 221 | 4.4E-8 | IPR001841 |
| SMART | SM00184 | ring_2 | 410 | 452 | 7.5E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 179 | 222 | 12.489278 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 410 | 453 | 12.799091 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_021866833.1 | putative RING-H2 finger protein ATL21B [Spinacia oleracea] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QU32 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_146530 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00018972, GOSA_00021088 |
| Amaranthaceae | Suaeda glauca | 13 | Sgl10267, Sgl10278, Sgl15511, Sgl34054, Sgl34088, Sgl34258 ... |