Basic Information
Locus ID:
Sgl39651
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB4 | 46285757 | 46286443 | + | Sgl39651 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 25,938.94 Da | 59.17 | 80.44 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 172 | 216 | 8.2E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 172 | 222 | 4.78E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 136 | 222 | 7.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 173 | 215 | 2.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 173 | 216 | 12.430266 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017604828.1 | PREDICTED: probable E3 ubiquitin-protein ligase RHG1A [Gossypium arboreum] | 0 |
| TrEMBL | A0A2G9GFL4 | Ubiquitin--protein ligase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_23392 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00018972, GOSA_00021088 |
| Amaranthaceae | Suaeda glauca | 13 | Sgl10267, Sgl10278, Sgl15511, Sgl34054, Sgl34088, Sgl34258 ... |