Basic Information
Locus ID:
Sgl39584
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB4 | 45873886 | 45879998 | + | Sgl39584 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 91,278.65 Da | 51.68 | 67.41 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 396 | 689 | 1.7E-40 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 393 | 695 | 4.12E-81 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 389 | 701 | 5.1E-86 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 396 | 692 | 47.599297 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 397 | 412 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 758 | 792 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 758 | 793 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 335 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 335 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_010681055.2 | ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RNB7 | Ubiquitin carboxyl-terminal hydrolase 15 OS=Spinacia oleracea OX=3562 GN=SOVF_052480 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology