Basic Information
Locus ID:
Sgl39332
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Short Name:
CMT1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB4 | 43945800 | 43952213 | - | Sgl39332 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 91,918.68 Da | 36.60 | 77.80 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 361 | 411 | 4.15818E-25 | - |
| Pfam | PF01426 | BAH domain | 107 | 204 | 3.3E-13 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 362 | 411 | 4.0E-11 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 421 | 780 | 2.1E-34 | IPR001525 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 348 | 413 | 4.95E-14 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 263 | 781 | 1.37E-75 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 266 | 799 | 1.4E-237 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 39 | 203 | 9.1E-43 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 575 | 748 | 1.4E-237 | - |
| SMART | SM00439 | BAH_4 | 101 | 214 | 2.3E-16 | IPR001025 |
| SMART | SM00298 | chromo_7 | 361 | 415 | 5.4E-8 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 264 | 789 | 42.935013 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 362 | 410 | 12.485101 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 101 | 214 | 19.635313 | IPR001025 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 380 | 400 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 470 | 484 | 4.4E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 265 | 281 | 4.4E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 516 | 529 | 4.4E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 257 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80740.1 | chromomethylase 1. ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation. | 0 |
| RefSeq | XP_010666617.2 | putative DNA (cytosine-5)-methyltransferase CMT1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9AXT8 | DNA (cytosine-5)-methyltransferase 1 OS=Zea mays OX=4577 GN=MET2A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8B4R8 | DNA (cytosine-5-)-methyltransferase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_003270 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology