Basic Information
Locus ID:
Sgl39297
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB4 | 43627855 | 43664072 | - | Sgl39297 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 239,974.67 Da | 43.04 | 85.47 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16910 | Repeating coiled region of VPS13 | 575 | 800 | 2.4E-30 | IPR031642 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 9.6E-32 | IPR026854 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 139 | 383 | 1.4E-67 | IPR031646 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 1839 | 2071 | 2.09E-36 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 1779 | 2068 | 1.9E-17 | IPR017946 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1629 | 1661 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2104 | 2123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2109 | 2123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1628 | 1661 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_010679514.1 | uncharacterized protein LOC104894866 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q93XX5 | PI-PLC X domain-containing protein At5g67130 OS=Arabidopsis thaliana OX=3702 GN=At5g67130 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RFD4 | C2 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_073140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology