Basic Information
Locus ID:
Sgl39278
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB4 | 43395135 | 43446860 | - | Sgl39278 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 433,599.91 Da | 42.92 | 87.69 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3629 | 3893 | 1.5E-8 | IPR009543 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 4.8E-31 | IPR026854 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 139 | 372 | 9.0E-61 | IPR031646 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 542 | 796 | 6.2E-26 | IPR031642 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1585 | 1680 | 1.1E-6 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2749 | 2893 | 1.2E-10 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2501 | 2668 | 2.9E-11 | IPR009291 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2141 | 2173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2140 | 2173 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_010679514.1 | uncharacterized protein LOC104894866 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q07878 | Intermembrane lipid transfer protein VPS13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RFD4 | C2 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_073140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology