Basic Information
Locus ID:
Sgl39146
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Zinc finger, C3HC4 type family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB4 | 42441530 | 42449493 | - | Sgl39146 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 97,734.83 Da | 47.62 | 65.71 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 38 | 86 | 1.24511E-17 | - |
| Pfam | PF04434 | SWIM zinc finger | 549 | 572 | 8.4E-5 | IPR007527 |
| Pfam | PF12906 | RING-variant domain | 38 | 85 | 8.7E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 33 | 90 | 3.67E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 97 | 3.0E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 37 | 86 | 2.0E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 30 | 92 | 20.281092 | IPR011016 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 543 | 575 | 9.866108 | IPR007527 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 789 | 803 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 675 | 707 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 765 | 783 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 675 | 850 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 724 | 743 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_010680600.1 | LOW QUALITY PROTEIN: uncharacterized protein LOC104895723 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SWG3 | Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KSN7 | RING-CH-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology