halophFGD

Basic Information

Locus ID: Sgl38889

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Description: aconitate hydratase activity

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrB4	40661919	40663181	-	Sgl38889

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.51	49,674.10 Da	46.91	90.48	-0.29

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12937	F-box-like	8	41	8.1E-8	IPR001810
SUPERFAMILY	SSF81383	F-box domain	8	81	2.09E-13	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	6	57	4.0E-10	-
SMART	SM00256	fbox_2	9	48	1.6E-7	IPR001810
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	115	276	2.6E-14	IPR017451
ProSiteProfiles	PS50181	F-box domain profile.	3	48	10.928167	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K01681 (aconitate hydratase [EC:4.2.1.3])

Pathway:

ko00020 (Citrate cycle (TCA cycle)) map00020 (Citrate cycle (TCA cycle)) ko00630 (Glyoxylate and dicarboxylate metabolism) map00630 (Glyoxylate and dicarboxylate metabolism) ko00720 (Other carbon fixation pathways) map00720 (Other carbon fixation pathways) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism) ko01210 (2-Oxocarboxylic acid metabolism) map01210 (2-Oxocarboxylic acid metabolism) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)

Module:

M00009 (Citrate cycle (TCA cycle, Krebs cycle)) M00010 (Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate) M00012 (Glyoxylate cycle) M00173 (Reductive citrate cycle (Arnon-Buchanan cycle)) M00740 (Methylaspartate cycle)

Reaction:

R01324 (Citrate <=> Isocitrate) R01325 (Citrate <=> cis-Aconitate + H2O) R01900 (Isocitrate <=> cis-Aconitate + H2O)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G23880.1	F-box and associated interaction domains-containing protein.	0
RefSeq	XP_021734128.1	F-box protein CPR30-like [Chenopodium quinoa]	0
Swiss-Prot	Q9LIR8	F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1	0
TrEMBL	A0A4S4EXL7	F-box domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_011500 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Atriplex hortensis	3	Ah000544, Ah000545, Ah000548
Amaranthaceae	Beta vulgaris	1	BVRB_5g117790
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00017365
Amaranthaceae	Suaeda glauca	16	Sgl02265, Sgl02998, Sgl03016, Sgl07416, Sgl08131, Sgl33489 ... Sgl33542, Sgl38889, Sgl54775, Sgl55167, Sgl55168, Sgl55169, Sgl60078, Sgl60417, Sgl71482, Sgl75070
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000005978, gene:ENSEOMG00000020505 ... gene:ENSEOMG00000022272, gene:ENSEOMG00000023952, gene:ENSEOMG00000031914, gene:ENSEOMG00000044719
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.5AG0023440, CQ.Regalona.r1.5BG0024920 ... CQ.Regalona.r1.5BG0024930