Basic Information
Locus ID:
Sgl38864
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB4 | 40559236 | 40566336 | + | Sgl38864 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 65,616.93 Da | 52.96 | 92.16 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 266 | 558 | 2.25554E-49 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 351 | 388 | 0.0038 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 477 | 515 | 0.13 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 520 | 558 | 3.0E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 312 | 346 | 0.0039 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 265 | 300 | 4.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 260 | 558 | 3.97E-65 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 522 | 580 | 3.6E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 263 | 521 | 3.7E-59 | IPR015943 |
| SMART | SM00320 | WD40_4 | 349 | 388 | 0.0053 | IPR001680 |
| SMART | SM00320 | WD40_4 | 474 | 516 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 519 | 559 | 1.0E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 390 | 430 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 346 | 1.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 262 | 301 | 2.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 431 | 470 | 28.0 | IPR001680 |
| SMART | SM00668 | ctlh | 96 | 153 | 2.9E-7 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 269 | 303 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 96 | 153 | 10.998156 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 314 | 351 | 10.811958 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 269 | 303 | 10.574686 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 63 | 95 | 8.439596 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 314 | 355 | 14.184453 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 526 | 560 | 11.181047 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 526 | 568 | 13.549507 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 288 | 302 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021713806.1 | uncharacterized WD repeat-containing protein C343.04c-like [Chenopodium quinoa] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KWW7 | WD repeat-containing protein 26 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology