Basic Information
Locus ID:
Sgl38793
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB4 | 40064390 | 40065160 | - | Sgl38793 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 28,656.39 Da | 38.81 | 83.28 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 207 | 251 | 6.67335E-18 | - |
| Pfam | PF13639 | Ring finger domain | 208 | 251 | 7.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 207 | 254 | 1.06E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 160 | 255 | 3.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 208 | 250 | 6.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 208 | 251 | 13.035139 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19950.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_048493146.1 | uncharacterized protein LOC125493699 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LPN7 | E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LGV5 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14054 |
| Amaranthaceae | Atriplex hortensis | 8 | Ah002233, Ah009874, Ah009885, Ah014959, Ah014962, Ah014966 ... |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_9g215960, BVRB_9g215970 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017607 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33425, Sgl38793 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000011465, gene:ENSEOMG00000030076 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0016950, CQ.Regalona.r1.8BG0017900 |