Basic Information
Locus ID:
Sgl38460
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
gag-polypeptide of LTR copia-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB4 | 38036485 | 38042786 | - | Sgl38460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 108,542.21 Da | 44.61 | 74.84 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03732 | Retrotransposon gag protein | 115 | 166 | 5.7E-8 | IPR005162 |
| Pfam | PF14244 | gag-polypeptide of LTR copia-type | 29 | 75 | 5.0E-13 | IPR029472 |
| Pfam | PF00665 | Integrase core domain | 595 | 692 | 2.1E-8 | IPR001584 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 595 | 768 | 8.85E-38 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 589 | 781 | 2.8E-39 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 593 | 759 | 19.255964 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 890 | 909 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_019258888.1 | PREDICTED: uncharacterized protein LOC109237086 [Nicotiana attenuata] | 0 |
| Q94HW2 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A438HB57 | Copia protein OS=Vitis vinifera OX=29760 GN=GIP_46 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||