Basic Information
Locus ID:
Sgl38011
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
transposon protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB4 | 32038791 | 32047562 | + | Sgl38011 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 79,476.24 Da | 49.11 | 79.51 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12896 | Anaphase-promoting complex, cyclosome, subunit 4 | 30 | 89 | 2.4E-10 | IPR024790 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 285 | 384 | 4.3E-33 | IPR025452 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 578 | 665 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 578 | 677 | - | - |
| Coils | Coil | Coil | 659 | 679 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21530.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_048491649.1 | uncharacterized protein LOC125492938 [Beta vulgaris subsp. vulgaris] | 0 |
| O65418 | Anaphase-promoting complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=APC4 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803N871 | DUF4218 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg61541 |
| Amaranthaceae | Suaeda glauca | 65 | Sgl03681, Sgl04249, Sgl04994, Sgl04995, Sgl08792, Sgl09205 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0009940 |