Basic Information
Locus ID:
Sgl37779
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB4 | 26849211 | 26859530 | + | Sgl37779 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 122,094.24 Da | 36.76 | 87.56 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 446 | 711 | 4.31543E-49 | - |
| CDD | cd07017 | S14_ClpP_2 | 1012 | 1076 | 3.88713E-32 | IPR001907 |
| Pfam | PF00574 | Clp protease | 1012 | 1076 | 2.4E-22 | IPR023562 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 451 | 690 | 3.9E-42 | IPR000477 |
| SUPERFAMILY | SSF52096 | ClpP/crotonase | 1011 | 1076 | 1.19E-18 | IPR029045 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 344 | 697 | 3.47E-18 | IPR043502 |
| SUPERFAMILY | SSF56219 | DNase I-like | 14 | 220 | 4.03E-20 | IPR036691 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 2 | 220 | 2.5E-20 | IPR036691 |
| Gene3D | G3DSA:3.90.226.10 | - | 980 | 1076 | 2.9E-20 | - |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 432 | 695 | 13.241904 | IPR000477 |
| ProSitePatterns | PS00381 | Endopeptidase Clp serine active site. | 1048 | 1059 | - | IPR018215 |
| PRINTS | PR00127 | Clp protease catalytic subunit P signature | 1048 | 1065 | 2.0E-18 | IPR001907 |
| PRINTS | PR00127 | Clp protease catalytic subunit P signature | 1017 | 1037 | 2.0E-18 | IPR001907 |
| PRINTS | PR00127 | Clp protease catalytic subunit P signature | 1069 | 1076 | 2.0E-18 | IPR001907 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | ATCG00670.1 | plastid-encoded CLP P. Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome. Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001). | 0 |
| RefSeq | XP_021858531.1 | uncharacterized protein LOC110797725 [Spinacia oleracea] | 0 |
| A0A360 | ATP-dependent Clp protease proteolytic subunit OS=Coffea arabica OX=13443 GN=clpP PE=3 SV=1 | 0 | |
| TrEMBL | F4NCH8 | Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010071, GOSA_00015070 |
| Amaranthaceae | Suaeda glauca | 45 | Sgl00660, Sgl00734, Sgl02856, Sgl04536, Sgl05678, Sgl09582 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000022031 |