Basic Information
Locus ID:
Sgl37596
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB4 | 22967605 | 22981228 | - | Sgl37596 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 43,125.69 Da | 39.96 | 78.33 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 179 | 373 | 4.7E-30 | IPR001394 |
| Pfam | PF03732 | Retrotransposon gag protein | 158 | 234 | 1.9E-7 | IPR005162 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 204 | 373 | 5.49E-44 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 177 | 375 | 8.5E-45 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 68 | 377 | 29.774771 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 321 | 339 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17895.1 | ubiquitin-specific protease 20. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021768192.1 | ubiquitin carboxyl-terminal hydrolase 36-like [Chenopodium quinoa] | 0 |
| Q9FPS7 | Ubiquitin carboxyl-terminal hydrolase 20 OS=Arabidopsis thaliana OX=3702 GN=UBP20 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803L607 | Ubiquitin carboxyl-terminal hydrolase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||