Basic Information
Locus ID:
Sgl37352
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB4 | 18159683 | 18173064 | + | Sgl37352 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 65,306.82 Da | 35.85 | 78.55 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00800 | Prephenate dehydratase | 449 | 524 | 4.3E-9 | IPR001086 |
| Pfam | PF03101 | FAR1 DNA-binding domain | 112 | 200 | 3.2E-17 | IPR004330 |
| SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | 451 | 523 | 1.09E-6 | - |
| Gene3D | G3DSA:3.40.190.10 | - | 443 | 523 | 1.2E-10 | - |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 276 | 312 | 9.396204 | IPR007527 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 430 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko00400 (Phenylalanine, tyrosine and tryptophan biosynthesis)
map00400 (Phenylalanine, tyrosine and tryptophan biosynthesis)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08250.1 | arogenate dehydratase 6. Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Although this enzyme has sequence similarity to prephenate dehydratases, it is 98 times more active with arogenate than prephenate in enzymatic assays. | 0 |
| RefSeq | XP_048498353.1 | protein FAR1-RELATED SEQUENCE 5-like [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SGD6 | Arogenate dehydratase/prephenate dehydratase 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ADT6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N2J0 | Protein FAR1-RELATED SEQUENCE OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00014604, GOSA_00014605, GOSA_00014807, GOSA_00023619 |
| Amaranthaceae | Suaeda glauca | 69 | Sgl00340, Sgl00670, Sgl00740, Sgl00768, Sgl02587, Sgl03588 ... |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G37147, Lb3G20849, Lb6G29885 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.16888_chr09_+, STRG.24247_chr10_+ |