HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: Sgl36493
Species & Taxonomic ID: Suaeda glauca & 397272
Genome Assembly: GWHEQCX00000000
Description: Ribonuclease H protein
Maps and Mapping Data
Chromosome Start End Strand ID
chrB4 4134350 4136031 - Sgl36493
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
7.91 43,000.69 Da 30.07 85.71 -0.26
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd06222 RNase_H_like 216 334 8.4865E-14 IPR044730
Pfam PF13456 Reverse transcriptase-like 217 335 1.1E-16 IPR002156
SUPERFAMILY SSF53098 Ribonuclease H-like 211 334 1.19E-6 IPR012337
Gene3D G3DSA:3.30.420.10 - 212 337 7.5E-8 IPR036397
Gene Ontology
Molecular Function:
GO:0003676 (nucleic acid binding) GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_021835469.1 uncharacterized protein LOC110775174 [Spinacia oleracea] 0
TrEMBL A0A6A3BLW5 Guanine nucleotide-binding protein subunit gamma 2-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110044pilonHSYRG00304 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Amaranthaceae Suaeda aralocaspica 1 GOSA_00028516
Amaranthaceae Suaeda glauca 12 Sgl10339, Sgl12213, Sgl12320, Sgl15576, Sgl17452, Sgl17603 ...
Sgl31150, Sgl36493, Sgl42248, Sgl47024, Sgl59481, Sgl82781
Arecaceae Phoenix dactylifera 1 gene-LOC103715302
Malvaceae Hibiscus hamabo Siebold & Zucc. 1 nbisL1-mrna-11805
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.