Basic Information
Locus ID:
Sgl36255
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA4 | 65826437 | 65832259 | + | Sgl36255 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.71 | 41,412.68 Da | 50.47 | 69.92 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 216 | 292 | 1.98426E-15 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 216 | 262 | 1.4E-6 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 203 | 301 | 3.4E-14 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 46 | 90 | 8.11E-7 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 198 | 306 | 4.5E-17 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 37 | 95 | 3.1E-6 | IPR036431 |
| SMART | SM00398 | hmgende2 | 215 | 296 | 5.3E-10 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 216 | 295 | 12.940521 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 211 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021837956.1 | high mobility group B protein 15-like isoform X2 [Spinacia oleracea] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RKE8 | High mobility group B protein 15-like OS=Spinacia oleracea OX=3562 GN=SOVF_061930 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology