Basic Information
Locus ID:
Sgl35719
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
cysteine-rich RLK (RECEPTOR-like protein kinase) 8
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA4 | 59088967 | 59093376 | + | Sgl35719 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 163,931.58 Da | 47.77 | 88.00 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 1310 | 1448 | 2.09143E-63 | - |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 984 | 1225 | 7.6E-73 | IPR013103 |
| Pfam | PF00665 | Integrase core domain | 614 | 713 | 2.3E-12 | IPR001584 |
| Pfam | PF03732 | Retrotransposon gag protein | 98 | 209 | 1.3E-5 | IPR005162 |
| Pfam | PF14244 | gag-polypeptide of LTR copia-type | 33 | 78 | 7.1E-12 | IPR029472 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 616 | 784 | 1.26E-36 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 987 | 1413 | 4.45E-30 | IPR043502 |
| Gene3D | G3DSA:3.30.420.10 | - | 607 | 792 | 1.6E-35 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 600 | 777 | 17.731518 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 867 | 886 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_048494802.1 | uncharacterized protein LOC109134389 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9ZT94 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 | 0 | |
| TrEMBL | A0A2N9H2Y3 | Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34107 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10961 |
| Amaranthaceae | Suaeda glauca | 13 | Sgl03301, Sgl07869, Sgl08373, Sgl10700, Sgl16034, Sgl34010 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0008630 |